Structural changes in the eight-stranded central β-sheet of kinesin. Side (
a) and end (
b) views of the kinesin β-sheet after a nucleotide-bound structure (
1BG2; Kull et al. ) was aligned with a rigor-like structure (
4OZQ; Arora et al. ) using the main chain atoms of the P-loop. Mg
2+ and ADP are shown as space-fill model and are colored
magenta and
cyan, respectively.
c The root-mean-square deviation (RMSD) of complementary residues is plotted for each individual β-strand.
d Individual β-strand curvature based on the sum of sequential C
α distances for each β-strand residue (
i = initial residue,
i + x = final residue) divided by the total distance from initial to final
plotted for nucleotide-bound and rigor-like structures.
e β-strand torsion angles (
τ) relative to β1 are plotted to quantify the degree of twisting within the entire β-sheet. Torsion angles were calculated using the following equation for each individual β-strand:
, where
are the unit vectors for each respective β-strand (Cecchini et al. ).
f The change in each individual β-strand torsion angle (
Δτ) as the kinesin central β-sheet transitions from nucleotide-bound (
1BG2) to rigor-like (
4OZQ) states